| Episode List: |
| Episode Name | Disc | Disc Order | Directors | Writers | Synopsis | IMDB | Personal Rating | Commentary |
| Season of Death | 1 | 1 | Ian Watson | Richard Manning | Crichton and company must deal with their grief over losing Aeryn while dealing with an attacking force. | 8.4 | 8 | |
| Suns and Lovers | 1 | 2 | Andrew Prowse | Justin Monjo | As the crew relax, they get caught up with a fanatic and her attack on a space station she claims was built in holy space. | 7.9 | 7 | |
| Self Inflicted Wounds: Part 1 - Could'a, Would'a, Should'a | 1 | 3 | Tony Tilse | David Kemper | While looking for a planet where they can plant Zhaan, Moya collides with another ship and gets lodged in a wormhole. | 8.1 | 7 | |
| Self Inflicted Wounds: Part 2 - Wait for the Wheel | 1 | 4 | Tony Tilse | David Kemper | A strange creature attacks the crew and they decide on one last-ditch effort to separate the two ships. | 8.3 | 7 | 1 |
| ...Different Destinations | 2 | 1 | Peter Andrikidis | Steve Worland | A technological accident involving Stark strands the crew in the distant past simply trying not to break the future. | 8.2 | 7 | |
| Eat Me | 2 | 2 | Ian Watson | Matt Ford | Crichton, Jool, D'Argo and Chiana end up on another leviathan with a psychotic genius. | 7.8 | 7 | 1 |
| Thanks for Sharing | 2 | 3 | Ian Barry | Clayvon C. Harris | The guys tend to a wounded Talyn and get caught up in a political struggle as they try to buy medicine for the ship. | 8.4 | 9 | |
| Green Eyed Monster | 2 | 4 | Tony Tilse | Ben Browder | Talyn gets swallowed by a Budong. | 8.3 | 8 | 1 |
| Losing Time | 3 | 1 | Catherine Millar | Justin Monjo | Crichton begins experiencing blackouts and eventually the whole group is affected. | 7.8 | 7 | |
| Relativity | 3 | 2 | Peter Andrikidis | Rockne S. O'Bannon | The retrieval squad catches up with Talyn as he recuperates on a high-gravity planet. | 8.1 | 8 | 1 |
| Episode Name | Disc | Disc Order | Directors | Writers | Synopsis | IMDB | Personal Rating | Commentary |
| Incubator | 3 | 3 | Ian Watson | Richard Manning | Scorpius shares his life story with a neural representation of John Crichton in an attempt to influence his help. | 8.3 | 7 | |
| Meltdown | 3 | 4 | Ian Barry | Matt Ford | Talyn dives straight for a star and is barely able to stop approaching, but can't quite pull away. | 7.6 | 6 | |
| Scratch 'N Sniff | 4 | 1 | Tony Tilse | Lily Taylor | Crichton and D'Argo are thrown off of Moya for their arguing but aren't long off the ship before more trouble finds them. | 8.5 | 7 | |
| Infinite Possibilities: Part 1 - Daedalus Demands | 4 | 2 | Peter Andrikidis | Carleton Eastlake | Crichton is confronted by the Ancient disguised as Jack. A copy of his ship was seen navigating a wormhole. | 8.5 | 8 | |
| Infinite Possibilities: Part 2 - Icarus Abides | 4 | 3 | Ian Watson | Carleton Eastlake | Crichton and Jack create a terrible weapon to fight off the Scarran Dreadnought that is approaching. | 8.8 | 8 | |
| Revenging Angel | 4 | 4 | Andrew Prowse | David Kemper | After a misunderstanding with D'Argo, Crichton ends up in a coma reliving his Saturday mornings as a kid. | 7.6 | 9 | |
| The Choice | 5 | 1 | Rowan Woods | Justin Monjo | After the death of her lover, Aeryn retreats to a planet where she may be able to contact the dead. | 8.2 | 7 | 2 |
| Fractures | 5 | 2 | Tony Tilse | Rockne S. O'Bannon | A group of former Peacekeeper prisoners may have a spy among them. | 7.9 | 7 | |
| I-Yensch, You-Yensch | 6 | 1 | Peter Andrikidis | Matt Ford | D'Argo and Rigel meet with Scorpius in an effort to work out a mutually beneficial deal. | 7.9 | 8 | |
| Into the Lion's Den: Part 1 - Lambs to the Slaughter | 6 | 2 | Ian Watson | Richard Manning | Crichton and crew show up on Scorpius' command carrier. | 8.9 | 8 | |
| Episode Name | Disc | Disc Order | Directors | Writers | Synopsis | IMDB | Personal Rating | Commentary |
| Into the Lion's Den: Part 2 - Wolf in Sheep's Clothing | 6 | 3 | Rowan Woods | Rockne S. O'Bannon | The group has no choice but to find a way to destroy the command carrier itself to stop Scorpius' project once and for all. | 9.0 | 9 | 1 |
| Dog with Two Bones | 6 | 4 | Andrew Prowse | David Kemper | Moya wishes to take Talyn's remains to the sacred place, but another leviathan has her own thoughts on the matter. | 8.3 | 7 | 1 |
